The Aalen-Johansen estimator of state probabilities from a multistate 'Lexis' object.
Births in Denmark by year and month of birth and sex
Clinical status, relapse, metastasis and death in 2982 women with breast cancer.
Conversion to diabetes
Epidemiological rates for diabetes in Denmark 1996-2015
The Danish National Diabetes Register.
Epi: Functions for manipulation and statistical analysis of epidemiological data
Fits a regression model to interval censored data.
Fit Lee-Carter-type models for rates to arbitrarily shaped observations of rates in a Lexis diagram.
Create a Lexis object of follow-up
Plot a Lexis diagram
Draw life lines in a Lexis diagram.
Convert a Lexis obejct to a data set suitable for input to the 'msm:msm' function.
Generate a knitting pattern for a tube-shaped scarf with Lexis lines
Compute dates/ages for life lines in a Lexis diagram
Mortality in Denmark 1974 ff.
Population size in Denmark
Create risk time ("Person-Years") in Lexis triangles from population count data.
Set up an array of NAs, solely from the list of dimnames
Natural splines - (cubic splines linear beyond outermost knots) with convenient specification of knots and possibility of centering, detrending and clamping.
Function to compute and draw ROC-curves.
Reorder and combine levels of a factor
Salmonella Typhimurium outbreak 1996 in Denmark.
A wrapper for 'termplot' that optionally (but by default) exponentiates terms, and plot them on a common log-scale. Also scales x-axes to the same physical scale.
Population risk time in Denmark
Add covariates (typically clinical measurements) taken at known times to a Lexis object.
Expand a Lexis object with information of drug exposure based on purchase dates and -amounts
Create a Lexis Object Given an ADAM ADTTE Dataset.
Fit Age-Period-Cohort models and Lee-Carter models with effects modeled by natural splines.
Fit an Age-Period-Cohort model to tabular data.
Produce an empty frame for display of parameter-estimates from Age-Period-Cohort-models.
A case-control study of endometrial cancer
Births in a London Hospital
Bladder cancer mortality in Italian males
Create a bootstrap sample of persons (as identified by 'lex.id') from a Lexis object
Draw boxes and arrows for illustration of multistate models.
Bereavement in an elderly cohort
Functions to convert character, factor and various date objects into a number, and vice versa.
Generate a nested case-control study
Compute cumulative risks and expected sojourn times from models for cause-specific rates.
Compute cumulative sum of estimates.
Linear predictor ('eta') from a formula, coefficients, vcov and a prediction frame.
Compute linear functions of parameters with standard errors and confidence limits, optionally transforming to a different scale.
Compute confidence limits for a difference of two independent proportions.
Conditional logistic regression
Contrast matrices
Fit a competing risks regression model (Fine-Gray model) using a Lexis object)
Cut follow-up at a specified date for each person.
Projection of a model matrix on the orthogonal complement of a trend or curvature.
Diet and heart data
Function to calculate effects
Function to calculate effects for individually matched case-control studies
Compute survival functions from rates and expected residual lifetime in an illness-death model as well as years of life lost to disease.
Rates of lung and nasal cancer mortality, and total mortality.
Function to expand data for regression analysis of interval censored data.
Fit an additive excess risk model to interval censored data.
Fit a piecewise contsnt intesity model for interval censored data.
Fits a multiplicative relative risk model to interval censored data.
Calculate floated variances
Create a data structures suitable for use with packages 'mstate' or 'etm'.
Fit a floating trend to a factor in generalized linear model
Generate covariates for drug-exposure follow-up from drug purchase records.
Population mortality rates for Denmark in 5-years age groups.
Create a basis of harmonic functions.
hivDK: seroconversion in a cohort of Danish men
Is 'x' in the column span of matrix 'A' and what columns are linearly dependent?
Draw a box with text explaining the numbers in and between boxes from 'boxes.MS' and 'boxes.Lexis'
An unmatched case-control study of leprosy incidence
Convenience versions of grep
Plot APC-estimates in an APC-frame.
Functions to manage and explore the workspace
Male lung cancer incidence in Denmark
Plot columns of a matrix as stacked areas.
Plot confidence intervals as shaded areas around lines.
Cut follow-up at multiple event dates and keep track of order of events
Merge a Lexis object with a data frame
Mantel-Haenszel analyses of cohort and case-control studies
Fit intensity models to follow-up data in Lexis objects
Population mortality rates for Denmark in 1-year age-classes.
Function to group a variable in intervals.
Nice breakpoints for axes on plots
A Cohort of Nickel Smelters in South Wales
A small occupational cohort
Check if records in a Lexis object represent overlapping epochs
Generate paths traveled through a Lexis multistate model data frame.
Plot period and cohort effects in an APC-frame.
Create percentages in a table
Lexis diagrams
Plot the estimates from a fitted Age-Period-Cohort model
Plotting Aalen-Johansen curves for competing events
Plot estimates with confidence limits (forest plot)
Plot Equivalence Classes
Family Object for Poisson Regression
Diabetes prevance as of 2010-01-01 in Denmark
Projection of columns of a matrix.
Functions to plot rates from a table classified by age and calendar time (period)
Combining a Lexis objects with data frames or other Lexis objects
A function to cut follow-up at intermediate event times.
Remove transitions from a Lexis object.
Simulate a Lexis object representing follow-up in a multistate model.
Split follow-up time in a Lexis object
Functions to facilitate analysis of multistate models.
Time series and other methods for Lexis objects
Tables of summary statistics
Special functions for use in stat.table
Clinical trial: Steno2 baseline and follow-up.
Subsetting Lexis (and stacked.Lexis) objects
Summarize transitions and risk time from a Lexis object
Testis cancer incidence in Denmark, 1943-1996
Thorotrast Study
Extract time band data from a split Lexis object
The time scales of a Lexis object
Transform a Lexis (or stacked.Lexis) object
Analysis of a two by two table
Remove Lexis attributes from a 'Lexis' object.
Cut follow-up in a 'Lexis' object by event date(s) while preserving the original states.